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1.
Emerg Infect Dis ; 29(5): 1007-1010, 2023 05.
Article in English | MEDLINE | ID: covidwho-20245370

ABSTRACT

Increasing reports of invasive Streptococcus pyogenes infections mandate surveillance for toxigenic lineage M1UK. An allele-specific PCR was developed to distinguish M1UK from other emm1 strains. The M1UK lineage represented 91% of invasive emm1 isolates in England in 2020. Allele-specific PCR will permit surveillance for M1UK without need for genome sequencing.


Subject(s)
Scarlet Fever , Streptococcal Infections , Humans , Streptococcus pyogenes/genetics , Scarlet Fever/epidemiology , Alleles , England/epidemiology , Streptococcal Infections/diagnosis , Streptococcal Infections/epidemiology , Polymerase Chain Reaction , Antigens, Bacterial/genetics , Bacterial Outer Membrane Proteins/genetics
2.
Microb Genom ; 9(6)2023 06.
Article in English | MEDLINE | ID: covidwho-20244144

ABSTRACT

Invasive group A streptococcal (iGAS) disease cases increased in the first half of 2022 in the Netherlands, with a remarkably high proportion of emm4 isolates. Whole-genome sequence analysis of 66 emm4 isolates, 40 isolates from the pre-coronavirus disease 2019 (COVID-19) pandemic period 2009-2019 and 26 contemporary isolates from 2022, identified a novel Streptococcus pyogenes lineage (M4NL22), which accounted for 85 % of emm4 iGAS cases in 2022. Surprisingly, we detected few isolates of the emm4 hypervirulent clone, which has replaced nearly all other emm4 in the USA and the UK. M4NL22 displayed genetic differences compared to other emm4 strains, although these were of unclear biological significance. In publicly available data, we identified a single Norwegian isolate belonging to M4NL22, which was sampled after the isolates from this study, possibly suggesting export of M4NL22 to Norway. In conclusion, our study identified a novel S. pyogenes emm4 lineage underlying an increase of iGAS disease in early 2022 in the Netherlands and the results have been promptly communicated to public health officials.


Subject(s)
COVID-19 , Streptococcal Infections , Humans , Antigens, Bacterial/genetics , Netherlands/epidemiology , Bacterial Outer Membrane Proteins/genetics , Carrier Proteins/genetics , Streptococcal Infections/epidemiology , Streptococcus pyogenes/genetics
3.
BMC Pediatr ; 23(1): 76, 2023 02 13.
Article in English | MEDLINE | ID: covidwho-2242649

ABSTRACT

BACKGROUND: Group A streptococcus is human-restricted gram-positive pathogen, responsible for various clinical presentations from mild epidermis infections to life threatened invasive diseases. Under COVID-19 pandemic,. the characteristics of the epidemic strains of GAS could be different. PURPOSE: To investigate epidemiological and molecular features of isolates from GAS infections among children in Beijing, China between January 2020 and December 2021. Antimicrobial susceptibility profiling was performed based on Cinical Laboratory Sandards Institute. Distribution of macrolide-resistance genes, emm types, and superantigens was examined by polymerase chain reaction. RESULTS: 114 GAS isolates were collected which were frequent resistance against erythromycin (94.74%), followed by clindamycin (92.98%), tetracycline (87.72%). Emm12 (46.49%), emm1 (25.44%) were dominant emm types. Distribution of ermB, ermA, and mefA gene was 93.85%, 2.63%, and 14.04%, respectively. Frequent superantigenes identified were smeZ (97.39%), speG (95.65%), and speC (92.17%). Emm1 strains possessed smeZ, ssa, and speC, while emm12 possessed smeZ, ssa, speG, and speC. Erythromycin resistance was predominantly mediated by ermB. Scarlet fever strains harbored smeZ (98.81%), speC (94.05%). Impetigo strains harbored smeZ (88.98%), ssa (88.89%), and speC (88.89%). Psoriasis strains harbored smeZ (100%). CONCLUSIONS: Under COVID-19 pandemic, our collections of GAS infection cutaneous diseases decreased dramatically. Epidemiological analysis of GAS infections among children during COVID-19 pandemic was not significantly different from our previous study. There was a correlation among emm, superantigen gene and disease manifestations. Long-term surveillance and investigation of emm types and superantigens of GAS prevalence are imperative.


Subject(s)
COVID-19 , Streptococcal Infections , Child , Humans , Beijing/epidemiology , Antigens, Bacterial/genetics , COVID-19/epidemiology , Streptococcal Infections/epidemiology , Streptococcus pyogenes , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , China/epidemiology , Erythromycin/pharmacology , Erythromycin/therapeutic use , Superantigens/genetics , Microbial Sensitivity Tests
4.
IAF Space Exploration Symposium 2021 at the 72nd International Astronautical Congress, IAC 2021 ; A3, 2021.
Article in English | Scopus | ID: covidwho-1782209

ABSTRACT

The Emirates Mars Mission (EMM) is the United Arab Emirates (UAE) first mission to Mars and is the first Arab mission to another planet. It launched an unmanned observatory called "Hope" into an elliptical orbit around Mars on July 20, 2020 carrying three scientific instruments to study the Martian atmosphere in visible, ultraviolet, and infrared wavelengths. EMM will be the first mission to provide the first truly global picture of the Martian atmosphere, revealing important information about how atmospheric processes drive diurnal variations for a period of one Martian year. This will provide scientists with valuable understanding of the changes to the Martian atmosphere today through the achievement of three scientific objectives: A. Characterize the state of the Martian lower atmosphere on global scales and its geographic, diurnal and seasonal variability. B. Correlate rates of thermal and photochemical atmospheric escape with conditions in the collisional Martian atmosphere. C. Characterize the spatial structure and variability of key constituents in the Martian exosphere. The mission is led by Emiratis from Mohammed Bin Rashid Space Centre (MBRSC) and is expanding the nation s human capital through knowledge transfer programs set with international partners from the University of Colorado Laboratory for Atmospheric and Space Physics (LASP), Arizona State University (ASU) School of Earth and Space Exploration, and University of California Berkeley Space Sciences Laboratory (SSL). The paper highlights the driving motivation behind the mission, its scientific objectives and instruments, the unforeseen challenges amid the COVID-19 pandemic, as well as the status and accomplishments of the mission since its Mars Orbit insertion on Feb 9, 2021. © 2021 International Astronautical Federation, IAF. All rights reserved.

5.
Eur J Clin Microbiol Infect Dis ; 40(11): 2295-2303, 2021 Nov.
Article in English | MEDLINE | ID: covidwho-1479485

ABSTRACT

The aim of this study is to present the first nationwide microbiological and epidemiological study of invasive group A Streptococcus (iGAS) disease in Spain. One thousand eight hundred ninety-three iGAS isolates were analyzed over 2007-2019. emm typing was performed by sequencing the gene's variable 5' end, exotoxin genes were identified by PCR, and antimicrobial susceptibility explored via the E test and disk diffusion. Five hundred twenty-three isolates were associated with sepsis, 292 with cellulitis, 232 with scarlet fever, 153 with pneumonia, 141 with streptococcal toxic shock syndrome, and 94 with necrotizing fasciitis. The most prevalent emm types were emm1 (449/1893 isolates), emm89 (210/1893), emm3 (208/1893), emm4 (150/1893), emm12 (112/1893) emm6 (107/1893), emm87 (89/1893), emm28 (88/1893), emm75 (78/1893), emm77 (78/1893), emm11 (58/1893), and emm22 (35/1893). emm1, emm3, emm4, and emm6 were the predominant types affecting children (mostly respiratory infections), while emm11, emm77, and emm89 prevailed in the elderly (mostly skin infections). Each emm type was associated with one or more exotoxin gene (spe, sme, and ssa) profiles. speA was detected in 660 isolates, speB in 1829, speC in 1014, speF in 1826, speG in 1651, speJ in 716, speH in 331, smeZ in 720, and ssa in 512. Isolates with speA were associated with the most severe infections. Penicillin susceptibility was universal. Two hundred twenty-four isolates were resistant to tetracycline, 169 to erythromycin, and 81 to clindamycin. Tetracycline, erythromycin, and clindamycin resistance rates declined over the study period. The above information could serve as the basis for continued surveillance efforts designed to control disease cause by this bacterium.


Subject(s)
Streptococcal Infections/microbiology , Streptococcus pyogenes/isolation & purification , Adolescent , Adult , Aged , Aged, 80 and over , Anti-Bacterial Agents/pharmacology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Carrier Proteins/genetics , Carrier Proteins/metabolism , Child , Child, Preschool , Erythromycin/pharmacology , Exotoxins/genetics , Exotoxins/metabolism , Female , Humans , Infant , Male , Membrane Proteins/genetics , Membrane Proteins/metabolism , Microbial Sensitivity Tests , Middle Aged , Penicillins/pharmacology , Spain/epidemiology , Streptococcal Infections/epidemiology , Streptococcus pyogenes/classification , Streptococcus pyogenes/drug effects , Streptococcus pyogenes/genetics , Young Adult
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